wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer

The package 'scCancer' is focuses on processing and analyzing scRNA-seq data for cancer research. Except routine data processing steps, it also integrates several cancer-specific analyses. For example, more comprehensive quality control, cancer microenvironment cell types prediction, cell malignancy estimation, gene set signature scores calculation, and expression programs identification. After all steps, the package can generate a user-friendly graphic report.

install.packages("remotes")
remotes::install_github("wguo-research/scCancer")