extractFiles: extractFiles

In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer

extractFiles

Description

Extract files from each sample's folder and rename them with sample's name.

Usage

extractFiles(
  savePath,
  sampleNames,
  outputPath,
  files = c("report-scStat.html", "report-scAnno.html"),
  subfolders = NULL
)

Arguments

savePath	A path of samples' result folder.
sampleNames	A vector of samples' names (the subfolder names in 'savePath').
outputPath	A path to saving the extracted reports.
files	The name of files you want to extract. The default is c("report-scStat.html", "report-scAnno.html").
subfolders	The name of subfolders for the files you want to extract. The default is NULL. It can be a character string, which means all files are under the subfolder. It can also be a character string vector with same length as "files", which are corresponding to "files".

wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.