getTumorCluster: getTumorCluster
In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer
getTumorCluster R Documentation
getTumorCluster
Description
Identify tumor clusters according to the results of cell type prediction and cell malignancy estimatation.
Usage
getTumorCluster(cell.annotation, epi.thres = 0.6, malign.thres = 0.8)
Arguments
cell.annotation
A data.frame of cells' annotation containing predicted cell typea and estimated cell malignant type.
epi.thres
A threshold for epithelial cell percent to decide putative tumor clusters.
malign.thres
A threshold for malignant cell percent to decide putative tumor clusters.
Value
A list of identified tumor clusters. If no clusters are found, return NULL.
wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.
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| getTumorCluster | R Documentation |
getTumorCluster
Description
Identify tumor clusters according to the results of cell type prediction and cell malignancy estimatation.
Usage
getTumorCluster(cell.annotation, epi.thres = 0.6, malign.thres = 0.8)
Arguments
cell.annotation |
A data.frame of cells' annotation containing predicted cell typea and estimated cell malignant type. |
epi.thres |
A threshold for epithelial cell percent to decide putative tumor clusters. |
malign.thres |
A threshold for malignant cell percent to decide putative tumor clusters. |
Value
A list of identified tumor clusters. If no clusters are found, return NULL.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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