runCellInteraction: runCellInteraction

In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer

runCellInteraction

Description

runCellInteraction

Usage

runCellInteraction(
  expr,
  cellSetName = "default",
  species = "human",
  savePath = NULL
)

Arguments

expr	A Seurat object.
cellSetName	The colunm name of ‘expr'’s 'meta.data', used to indicate the cell set annotation.
species	A character string indicating what species the sample belong to. Only "human"(default) or "mouse" are allowed.
savePath	A path to save the results files. If NULL, the 'statPath' will be used instead.

Value

A data frame which contains the cell sets ligand-receptor pairs and their scores.

wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.