runStemness: runStemness
In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer
runStemness R Documentation
runStemness
Description
Estimate cell stemness according to the Spearman correlation with stemness signature.
Usage
runStemness(X, stem.sig = NULL, species = "human")
Arguments
X
An expression matrix of gene by cell to estimate stemness.
stem.sig
An array of stemness signature. The default is NULL, and a prepared signature will be used.
species
A character string indicating what species the sample belong to.
Only "human"(default) or "mouse" are allowed.
Value
An array of cell stemness scores.
wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.
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| runStemness | R Documentation |
runStemness
Description
Estimate cell stemness according to the Spearman correlation with stemness signature.
Usage
runStemness(X, stem.sig = NULL, species = "human")
Arguments
X |
An expression matrix of gene by cell to estimate stemness. |
stem.sig |
An array of stemness signature. The default is NULL, and a prepared signature will be used. |
species |
A character string indicating what species the sample belong to. Only "human"(default) or "mouse" are allowed. |
Value
An array of cell stemness scores.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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