runGeneSets: runGeneSets
In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer
runGeneSets R Documentation
runGeneSets
Description
Calculate gene set signature scores for cells.
Usage
runGeneSets(expr, geneSets, method = "average")
Arguments
expr
A Seurat object.
geneSets
A list of gene sets to be analyzed. The default is NULL and 50 hallmark gene sets from MSigDB will be used.
method
The method to be used in calculate gene set scores. Currently, only "average" and "GSVA" are allowed.
Value
A data.frame of calculated gene set signature scores.
wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.
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| runGeneSets | R Documentation |
runGeneSets
Description
Calculate gene set signature scores for cells.
Usage
runGeneSets(expr, geneSets, method = "average")
Arguments
expr |
A Seurat object. |
geneSets |
A list of gene sets to be analyzed. The default is NULL and 50 hallmark gene sets from MSigDB will be used. |
method |
The method to be used in calculate gene set scores. Currently, only "average" and "GSVA" are allowed. |
Value
A data.frame of calculated gene set signature scores.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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