markerPlot: markerPlot

In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer

markerPlot

Description

Generate plots of interested genes' expression profile.

Usage

markerPlot(
  expr.data,
  coor.df,
  coor.names = c("tSNE_1", "tSNE_2"),
  features = NULL,
  add = T,
  species = "human",
  font.size = 4,
  color = "blue"
)

Arguments

expr.data	A matrix of expression (gene by cell)
coor.df	A data.frame which contains cells' 2D coordinates.
coor.names	A vector indicating the names of two-dimension coordinate used in visualization.
features	A vector of genes to plot.
add	A logical value indicating whether to present the default markers.
species	A character string indicating what species the sample belong to. Only "human"(default) or "mouse" are allowed.
font.size	The size of labels.
color	The color of point.

Value

A list of ggplot obejects for each maker genes.

wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.