API for wguo-research/scCancer
A package for automated processing of single cell RNA-seq data in cancer
| Global functions | |
|---|---|
| Read10Xdata | Man page |
| annoSpecies | Source code |
| anscombeTransform | Source code |
| bgCellScatter | Source code |
| bgDetScatter | Source code |
| boundForCNV | Source code |
| calcThres | Source code |
| cellsPlot | Source code |
| centerAcrossChr | Source code |
| checkAnnoArguments | Man page Source code |
| checkCombArguments | Man page Source code |
| checkStatArguments | Man page Source code |
| clusterBarPlot | Man page Source code |
| denoiseByRefMeanSd | Source code |
| extractFiles | Man page Source code |
| filterCell | Source code |
| filterGene | Source code |
| genAnnoReport | Man page Source code |
| genStatReport | Man page Source code |
| genePropPlot | Source code |
| generate10Xdata | Man page Source code |
| getAverageBounds | Source code |
| getBarcodes | Source code |
| getBgPercent | Source code |
| getBimodalThres | Source code |
| getCRversion | Source code |
| getCellTypeColor | Man page Source code |
| getCellix | Source code |
| getClusterInfo | Source code |
| getDefaultColors | Man page Source code |
| getDefaultGeneSets | Man page Source code |
| getDefaultMarkers | Man page Source code |
| getDetectRate | Source code |
| getExprProp | Source code |
| getGeneManifest | Source code |
| getLowFrac | Source code |
| getMalignScore | Source code |
| getMouseGene | Source code |
| getNcell | Source code |
| getOutliers | Source code |
| getPropMedian | Source code |
| getSingleSpecies | Source code |
| getTumorCluster | Man page Source code |
| ggplot_config | Man page Source code |
| grid_arrange_shared_legend | Source code |
| histPlot | Source code |
| invertLog2 | Source code |
| limitData | Source code |
| logForCNV | Source code |
| malignPlot | Source code |
| marginPlot | Source code |
| markerPlot | Man page Source code |
| normalizeDataForCNV | Source code |
| plotCellInteraction | Man page Source code |
| plotExprProgram | Man page Source code |
| plotGeneSet | Man page Source code |
| plotMalignancy | Man page Source code |
| plotSeurat | Man page Source code |
| pointDRPlot | Man page Source code |
| preDEheatmap | Source code |
| predCellType | Man page Source code |
| prepareCNV | Source code |
| prepareData | Man page Source code |
| prepareSeurat | Man page Source code |
| removeOutliers | Source code |
| rmContamination | Source code |
| rmGeneForCNV | Source code |
| runCNV | Source code |
| runCellClassify | Man page Source code |
| runCellCycle | Man page Source code |
| runCellInteraction | Man page Source code |
| runDoublet | Man page Source code |
| runExprProgram | Man page Source code |
| runGeneSets | Man page Source code |
| runMalignancy | Man page Source code |
| runScAnnotation | Man page Source code |
| runScCombination | Man page Source code |
| runScStatistics | Man page Source code |
| runSeurat | Man page Source code |
| runStemness | Man page Source code |
| runSurvival | Man page Source code |
| singleGenePlot | Source code |
| smoothByChr | Source code |
| smoothOne | Source code |
| subtractRefExpr | Source code |
| updateGeneM | Source code |
