Man pages for wguo-research/scCancer
A package for automated processing of single cell RNA-seq data in cancer
| checkAnnoArguments | checkAnnoArguments |
| checkCombArguments | checkCombArguments |
| checkStatArguments | checkStatArguments |
| clusterBarPlot | clusterBarPlot |
| extractFiles | extractFiles |
| genAnnoReport | genAnnoReport |
| generate10Xdata | generate10Xdata |
| genStatReport | genStatReport |
| getCellTypeColor | getCellTypeColor |
| getDefaultColors | getDefaultColors |
| getDefaultGeneSets | getDefaultGeneSets |
| getDefaultMarkers | getDefaultMarkers |
| getTumorCluster | getTumorCluster |
| ggplot_config | ggplot_config |
| markerPlot | markerPlot |
| plotCellInteraction | plotCellInteraction |
| plotExprProgram | plotExprProgram |
| plotGeneSet | plotGeneSet |
| plotMalignancy | plotMalignancy |
| plotSeurat | plotSeurat |
| pointDRPlot | pointDRPlot |
| predCellType | predCellType |
| prepareData | prepareData |
| prepareSeurat | prepareSeurat |
| Read10Xdata | Read10Xdata |
| runCellClassify | runCellClassify |
| runCellCycle | runCellCycle |
| runCellInteraction | runCellInteraction |
| runDoublet | runDoublet |
| runExprProgram | runExprProgram |
| runGeneSets | runGeneSets |
| runMalignancy | runMalignancy |
| runScAnnotation | runScAnnotation |
| runScCombination | runScCombination |
| runScStatistics | runScStatistics |
| runSeurat | runSeurat |
| runStemness | runStemness |
| runSurvival | runSurvival |
