xavierdidelot/EpiPhylo: Inference of Transmission Tree from a Dated Phylogeny
Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) <doi:10.1093/molbev/msu121>, Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
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Package details |
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| Maintainer | Xavier Didelot <xavier.didelot@gmail.com> |
| License | GPL (>=2) |
| Version | 1.4.10 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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