getOffspringDist: Extract and return offspring distribution of given sampled...

In xavierdidelot/EpiPhylo: Inference of Transmission Tree from a Dated Phylogeny

Extract and return offspring distribution of given sampled case(s)

Description

Extract and return offspring distribution of given sampled case(s)

Usage

getOffspringDist(record, burnin = 0.5, k, show.plot = F)

Arguments

record	MCMC output produced by inferTTree
burnin	Proportion of the MCMC output to be discarded as burnin
k	Case(s) whose offspring distribution are to be extracted. Either a string matching one of the case names in the data, or a vector of such strings
show.plot	Show a barplot of the distribution

Value

Posterior offspring distribution for the case(s) in k. If length(k)==1 then a vector is returned, otherwise a matrix

xavierdidelot/EpiPhylo documentation built on Sept. 28, 2023, 6:39 p.m.