API for xavierdidelot/EpiPhylo
Inference of Transmission Tree under a Within-Host Evolution Model

Global functions
TransPhylo Man page
computeHost Source code
computeMatTDist Man page Source code
computeMatWIW Man page Source code
consTTree Man page Source code
convertToCoda Man page Source code
extractPTree Man page Source code
extractSubtree Source code
extractTTree Man page Source code
getGenerationTimeDist Man page Source code
getGenerationTimes Source code
getIncidentCases Man page Source code Source code
getInfectionTimeDist Man page Source code
getInfectionTimes Source code
getNumberUnsampled Source code
getOmegabarR Source code
getSamplingTimeDist Man page Source code
getTTreeDistInfo Source code
glueTrees Source code
inferTTree Man page Source code
infer_multittree_share_param Man page Source code
makeCtreeFromPTree Man page Source code
makeTTree Man page Source code
move1 Source code
move2 Source code
move3 Source code
networkPlot Source code
phyloFromPTree Man page Source code
plotCTree Man page Source code
plotTTree Man page Source code
plotTTree2 Man page Source code
plotTraces Man page Source code
probPTreeGivenTTree Man page Source code
probSubtree Source code
probTTree Man page Source code
probTTreeR Man page Source code
proposal Source code
ptreeFromPhylo Man page Source code
selectTTree Man page Source code
seqML Source code
simulateOutbreak Man page Source code
treeAdd Source code
treeRem Source code
wbar Source code
withinhost Source code
xavierdidelot/EpiPhylo documentation built on Dec. 14, 2018, 5:23 p.m.