View source: R/interpret.R View source: R/extras/getIncidentCases.R
getIncidentCases | R Documentation |
Returns and/or plot numbers of sampled and unsampled cases over time
getIncidentCases(
record,
burnin = 0.5,
numBins = 10,
dateT = NA,
show.plot = FALSE
)
record |
Output from inferTTree function |
burnin |
Proportion of the MCMC output to be discarded as burnin |
numBins |
Number of time bins to compute and display incident cases |
dateT |
Date when process stops (this can be Inf for fully resolved outbreaks) |
show.plot |
Show a plot of incident cases over time with stacked bars |
List with four entries. Time is a vector of the time points. allCases is the average number of cases at each time in the posterior. sampledCases: average number of sampled cases. unsampCases: average number of unsampled cases.
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