plot.ttree: Plotting for ttree
In xavierdidelot/EpiPhylo: Inference of Transmission Tree from a Dated Phylogeny
plot.ttree R Documentation
Plotting for ttree
Description
Plotting for ttree
Usage
## S3 method for class 'ttree'
plot(x, type = "summarised", w.shape = NA, w.scale = NA, ...)
Arguments
x
Object of class ttree, ie a transmission tree
type
Type of plot to display, can be 'detailed' or 'summarised' (default)
w.shape
Shape parameter of the generation time, needed for detailed plot only
w.scale
Scale parameter of the generation time, needed for detailed plot only
...
Additional parameters are passed on
Value
Plot of ttree
Examples
plot(extractTTree(simulateOutbreak()))
xavierdidelot/EpiPhylo documentation built on Sept. 28, 2023, 6:39 p.m.
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| plot.ttree | R Documentation |
Plotting for ttree
Description
Plotting for ttree
Usage
## S3 method for class 'ttree'
plot(x, type = "summarised", w.shape = NA, w.scale = NA, ...)
Arguments
x |
Object of class ttree, ie a transmission tree |
type |
Type of plot to display, can be 'detailed' or 'summarised' (default) |
w.shape |
Shape parameter of the generation time, needed for detailed plot only |
w.scale |
Scale parameter of the generation time, needed for detailed plot only |
... |
Additional parameters are passed on |
Value
Plot of ttree
Examples
plot(extractTTree(simulateOutbreak()))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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