getSamplingTimeDist: Extract and return realised sampling time distribution

In xavierdidelot/EpiPhylo: Inference of Transmission Tree from a Dated Phylogeny

Extract and return realised sampling time distribution

Description

Extract and return realised sampling time distribution

Usage

getSamplingTimeDist(
  record,
  burnin = 0.5,
  maxi = 2,
  numBins = 20,
  show.plot = F
)

Arguments

record	MCMC output produced by inferTTree
burnin	Proportion of the MCMC output to be discarded as burnin
maxi	Maximum generation time to consider
numBins	Number of time bins to compute and display distribution
show.plot	Show a barplot of the distribution

Value

Vector of times between becoming infected and becoming sampled in the posterior

xavierdidelot/EpiPhylo documentation built on Sept. 28, 2023, 6:39 p.m.