Files in xlucpu/MOVICS

Multi-Omics integration and VIsualization in Cancer Subtyping

LICENSE.md MOVICS.pdf NEWS.md R/LRAcluster.R R/compAgree.R R/compClinvar.R R/compDrugsen.R R/compFGA.R R/compMut.R R/compSurv.R R/compTMB.R R/dataset.R R/getCIMLR.R R/getCOCA.R R/getClustNum.R R/getConsensusClustering.R R/getConsensusMOIC.R R/getElites.R R/getIntNMF.R R/getLRAcluster.R R/getMOIC.R R/getMoCluster.R R/getMoHeatmap.R R/getNEMO.R R/getPINSPlus.R R/getSNF.R R/getSilhouette.R R/getStdiz.R R/getiClusterBayes.R R/global.R R/pRRophetic.R R/quiet.R R/runDEA.R R/runGSEA.R R/runGSVA.R R/runKappa.R R/runMarker.R R/runNTP.R R/runPAM.R README.md inst/doc/MOVICS-VIGNETTE.R inst/doc/MOVICS-VIGNETTE.Rmd man/LRAcluster.Rd man/affinityMatrix.Rd man/calcPhenotype.Rd man/cgp2016ExprRma.Rd man/classifySamples.Rd man/compAgree.Rd man/compClinvar.Rd man/compDrugsen.Rd man/compFGA.Rd man/compMut.Rd man/compSurv.Rd man/compTMB.Rd man/dist2.Rd man/doVariableSelection.Rd man/drugData2016.Rd man/estimateCI.pRRopheticCv.Rd man/estimateMeanPredictionError.pRRopheticCv.Rd man/estimateMedianPredictionError.pRRopheticCv.Rd man/estimateRsqr.pRRopheticCv.Rd man/getCGPinfo.Rd man/getCIMLR.Rd man/getCOCA.Rd man/getClustNum.Rd man/getConsensusClustering.Rd man/getConsensusMOIC.Rd man/getElites.Rd man/getIntNMF.Rd man/getLRAcluster.Rd man/getMOIC.Rd man/getMoCluster.Rd man/getMoHeatmap.Rd man/getNEMO.Rd man/getPINSPlus.Rd man/getPPV.Rd man/getSNF.Rd man/getSilhouette.Rd man/getStdiz.Rd man/getiClusterBayes.Rd man/homogenizeData.Rd man/nemo.affinity.graph.Rd man/nemo.clustering.Rd man/nemo.num.clusters.Rd man/pRRopheticCV.Rd man/pRRopheticLogisticPredict.Rd man/pRRopheticPredict.Rd man/pRRopheticQQplot.Rd man/plot.pRRopheticCv.Rd man/predictionAccuracyByCv.Rd man/quiet.Rd man/runDEA.Rd man/runGSEA.Rd man/runGSVA.Rd man/runKappa.Rd man/runMarker.Rd man/runNTP.Rd man/runPAM.Rd man/spectralClustering.Rd man/summarizeGenesByMean.Rd man/summary.pRRopheticCv.Rd man/twoclassdeseq2.Rd man/twoclassedger.Rd man/twoclasslimma.Rd tests/testthat.R tests/testthat/optimal_number_cluster.pdf tests/testthat/testthat.R vignettes/MOVICS-VIGNETTE.Rmd