plotHeatmap: Plot heatmap

In xu-lab/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Plot heatmap Acknowledgment: Implementation was based on the DoHeatmap function in Seurat

Usage

plotHeatmap(object, genes = NULL, cells = NULL, scaled = T,
  do.log2 = FALSE, order.by.group = T, minmax = c(-1, 1),
  show.labCol = FALSE, show.labRow = FALSE, ...)

Arguments

object	A sincera object
genes	The expression patterns of genes to be shown in the heatmap If NULL, set to all genes
cells	The cells to be shown in the heatmap. If NULL, set to all cells
scaled	If TRUE, use scaled expression
do.log2	IF TRUE, apply log2 transformatoin to the expression
order.by.group	IF TRUE, order cells based on their GROUP information
minmax	The minimum and maximum values for color scale
show.labRow	If TRUE, show the row labels
show.labcol	If TRUE, show the column lables

xu-lab/SINCERA documentation built on Feb. 3, 2021, 4:19 a.m.