API for yannchristinat/oncoscanR
Secondary analyses of CNV data (HRD and more)
| Global functions | |
|---|---|
| adjust_loh | Man page Source code |
| armlevel_alt | Man page Source code |
| cntypes | Man page |
| getLOHtoadd | Source code |
| get_amp_segments | Man page Source code |
| get_gain_segments | Man page Source code |
| get_hetloss_segments | Man page Source code |
| get_homloss_segments | Man page Source code |
| get_loh_segments | Man page Source code |
| get_loss_segments | Man page Source code |
| get_oncoscan_coverage_from_bed | Man page Source code |
| is_arm_to_ban | Source code |
| is_cn_segment | Source code |
| load_ascat | Man page Source code |
| load_chas | Man page Source code |
| merge_segments | Man page Source code |
| oncoscanR | Man page |
| oncoscanR-package | Man page |
| oncoscan_na33.cov | Man page |
| process_chas | Source code |
| prune_by_size | Man page Source code |
| score_avgcn | Man page Source code |
| score_estwgd | Man page Source code |
| score_gloh | Man page Source code |
| score_loh | Man page Source code |
| score_lst | Man page Source code |
| score_mbalt | Man page Source code |
| score_nlst | Man page Source code |
| score_td | Man page Source code |
| segs.chas_example | Man page |
| trim_to_coverage | Man page Source code |
| workflow_oncoscan.ascat | Man page Source code |
| workflow_oncoscan.chas | Man page Source code |
