API for yanwu2014/chromfunks
Functions for Analyzing Chromatin Accessibility Data
| Global functions | |
|---|---|
| AddLinkCorrelations | Man page Source code |
| CalcDiffAccess | Man page Source code |
| ChromRegionEnrich | Man page Source code |
| FilterConns | Man page Source code |
| FindCausalPeaks | Man page Source code |
| FindCausalProb | Man page Source code |
| FindLinkedGenes | Man page Source code |
| FindNearbyGenes | Man page Source code |
| GetBinCounts | Man page Source code |
| GetClusterAvg | Man page Source code |
| GetRegionCounts | Man page Source code |
| ImportCausalSNPs | Man page Source code |
| JSdistVec | Source code |
| LogTFIDF | Man page Source code |
| MotifEnrich | Man page Source code |
| MotifRegionLinks | Man page Source code |
| PlotNetwork | Man page Source code |
| RegionChromVAR | Man page Source code |
| RegionGeneLinks | Man page Source code |
| RegionOverlapList | Man page Source code |
| RegionOverlapScores | Man page Source code |
| SubsetLinks | Man page Source code |
| TFGeneLinks | Man page Source code |
| TFRegionLinks | Man page Source code |
| TopDiffPeaks | Man page Source code |
| calc_site_logfc | Source code |
| calc_site_phyper | Source code |
| calc_site_prop | Source code |
| calc_site_specificity | Source code |
| chromfunks-deprecated | Man page |
| extend_gr | Man page Source code |
| extractField | Man page |
| find_all_diff | Man page Source code |
| find_all_diff-deprecated | Man page |
| flattenMat | Man page Source code |
| formatCisTopicPeaks | Man page Source code |
| geneAnno | Man page Source code |
| getBulkDev | Man page Source code |
| getPseudobulk | Man page Source code |
| granges2df | Man page Source code |
| granges2peak | Man page Source code |
| hello | Man page |
| invertList | Man page Source code |
| invertListVector | Man page Source code |
| makeprobsvec | Source code |
| peak2df | Man page Source code |
| peak2granges | Man page Source code |
| shannon.entropy | Source code |
| simpleCap | Man page Source code |
| sparse_agg_row | Source code |
| specificity_scorer | Source code |
| top_diff_peaks | Man page Source code |
| top_diff_peaks-deprecated | Man page |
| unflattenVec | Man page Source code |
