FindNearbyGenes: Find all genes within specified distance of each genomic...
In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data
FindNearbyGenes R Documentation
Find all genes within specified distance of each genomic region
Description
Find all genes within specified distance of each genomic region
Usage
FindNearbyGenes(regions, genes.anno, distance, chr.lengths, region.name = NULL)
Arguments
genes.anno
Gene annotations generated by the geneAnno function
distance
Distance to search for genes
chr.lengths
Chromosome sizes
region.name
Name of each region if in the GRanges metadata. Otherwise set to null.
gr
Genomic regions
Value
List of genes within specified distance of genomic regions
yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.
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| FindNearbyGenes | R Documentation |
Find all genes within specified distance of each genomic region
Description
Find all genes within specified distance of each genomic region
Usage
FindNearbyGenes(regions, genes.anno, distance, chr.lengths, region.name = NULL)
Arguments
genes.anno |
Gene annotations generated by the geneAnno function |
distance |
Distance to search for genes |
chr.lengths |
Chromosome sizes |
region.name |
Name of each region if in the GRanges metadata. Otherwise set to null. |
gr |
Genomic regions |
Value
List of genes within specified distance of genomic regions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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