MotifEnrich: Computes motif enrichment with a hypergeometric distribution

In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data

Computes motif enrichment with a hypergeometric distribution

Description

Computes motif enrichment with a hypergeometric distribution

Usage

MotifEnrich(
  meta.features,
  features,
  motif.all,
  n.background = 40000,
  verbose = TRUE
)

Arguments

meta.features	Dataframe with gc content and peak names
features	Vector peak names to test for enrichment. All peaks must be in meta.features
motif.all	Matrix of peaks by motifs
n.background	Number of background peaks to sample
verbose	Print progress

Value

Dataframe with motif enrichment results

yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.