FindLinkedGenes: Find genes coaccessible with causal peaks for each...

In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data

Find genes coaccessible with causal peaks for each cluster/trait pair

Description

Find genes coaccessible with causal peaks for each cluster/trait pair

Usage

FindLinkedGenes(pheno.cl.use, causal.z, peak.gene.weights, min.weight = 0.1)

Arguments

pheno.cl.use	Trait/cluster pairs to analyze, as a character vector of "trait: cluster" elements
causal.z	List of lists of causal peaks for each trait and cell type generated by FindCausalPeaks
peak.gene.weights	Matrix of peak - gene coaccessibilities
min.weight	Minimum coaccessibility to consider

Value

Matrix describing the coaccessibility of specified trait/cluster pairs with genes

yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.