find_all_diff-deprecated: find_all_diff
In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data
find_all_diff-deprecated R Documentation
find_all_diff
Description
Find differentially accessible peaks/genes for each cluster
Arguments
counts
Binary accessibility matrix (peaks x cells)
clusters
Cluster assignments encoded as a factor
min.p
Minimum p-value possible
Value
List of dataframes with cluster specificity, logfc, and p-value for each site tested
See Also
chromfunks-deprecated
yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.
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| find_all_diff-deprecated | R Documentation |
find_all_diff
Description
Find differentially accessible peaks/genes for each cluster
Arguments
counts |
Binary accessibility matrix (peaks x cells) |
clusters |
Cluster assignments encoded as a factor |
min.p |
Minimum p-value possible |
Value
List of dataframes with cluster specificity, logfc, and p-value for each site tested
See Also
chromfunks-deprecated
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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