FindCausalProb: Find the posterior probability score of causal peaks...
In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data
FindCausalProb R Documentation
Find the posterior probability score of causal peaks coaccessible with genes for specified trait/cluster pairs
Description
Find the posterior probability score of causal peaks coaccessible with genes for specified trait/cluster pairs
Usage
FindCausalProb(pheno.genes.mat, causal.z, peak.gene.weights)
Arguments
pheno.genes.mat
Matrix describing the coaccessibility of specified trait/cluster pairs with genes. Generated by FindLinkedGenes.
causal.z
List of lists of causal peaks for each trait and cell type generated by FindCausalPeaks
peak.gene.weights
Matrix of peak - gene coaccessibilities
Value
Matrix of the sum of posterior probabilities of causal snps driving the coaccessibility of specified trait/cluster pairs with genes
yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| FindCausalProb | R Documentation |
Find the posterior probability score of causal peaks coaccessible with genes for specified trait/cluster pairs
Description
Find the posterior probability score of causal peaks coaccessible with genes for specified trait/cluster pairs
Usage
FindCausalProb(pheno.genes.mat, causal.z, peak.gene.weights)
Arguments
pheno.genes.mat |
Matrix describing the coaccessibility of specified trait/cluster pairs with genes. Generated by FindLinkedGenes. |
causal.z |
List of lists of causal peaks for each trait and cell type generated by FindCausalPeaks |
peak.gene.weights |
Matrix of peak - gene coaccessibilities |
Value
Matrix of the sum of posterior probabilities of causal snps driving the coaccessibility of specified trait/cluster pairs with genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.