ChromRegionEnrich: Compute enrichment in each column of the chromatin...
In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data
View source: R/region_enrich.R
ChromRegionEnrich R Documentation
Compute enrichment in each column of the chromatin accessibility matrix for all regions in regionsList
Description
Compute enrichment in each column of the chromatin accessibility matrix for all regions in regionsList
Usage
ChromRegionEnrich(SE, regionsList, n.runs = 5)
Arguments
SE
Peaks accessibility matrix in SummarizedExperiment format
regionsList
List of regions in GenomicRanges format
n.runs
Number of replicates to run
Value
Matrix of z-scores representing the enrichment of each set of regions in each column of SE
yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/region_enrich.R
| ChromRegionEnrich | R Documentation |
Compute enrichment in each column of the chromatin accessibility matrix for all regions in regionsList
Description
Compute enrichment in each column of the chromatin accessibility matrix for all regions in regionsList
Usage
ChromRegionEnrich(SE, regionsList, n.runs = 5)
Arguments
SE |
Peaks accessibility matrix in SummarizedExperiment format |
regionsList |
List of regions in GenomicRanges format |
n.runs |
Number of replicates to run |
Value
Matrix of z-scores representing the enrichment of each set of regions in each column of SE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.