top_diff_peaks-deprecated: top_diff_peaks
In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data
top_diff_peaks-deprecated R Documentation
top_diff_peaks
Description
Subset to top differentially accessible peaks for each cluster
Arguments
diff_peaks_list
List of dA peaks per cluster. Output by find_all_diff
qval.cutoff
Q-value cutoff to call a site differentially accessible
specificity.cutoff
Specificity score cutoff
logfc.cutoff
Log fold-change cutoff
max.peaks
Max number of peaks to keep for each cluster
Value
Filtered list of granges with cluster specificity, logfc, and p-value for each site tested
See Also
chromfunks-deprecated
yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.
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| top_diff_peaks-deprecated | R Documentation |
top_diff_peaks
Description
Subset to top differentially accessible peaks for each cluster
Arguments
diff_peaks_list |
List of dA peaks per cluster. Output by find_all_diff |
qval.cutoff |
Q-value cutoff to call a site differentially accessible |
specificity.cutoff |
Specificity score cutoff |
logfc.cutoff |
Log fold-change cutoff |
max.peaks |
Max number of peaks to keep for each cluster |
Value
Filtered list of granges with cluster specificity, logfc, and p-value for each site tested
See Also
chromfunks-deprecated
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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