RegionOverlapScores: Get overlaps between list of granges and granges in matrix...
In yanwu2014/chromfunks: Functions for Analyzing Chromatin Accessibility Data
View source: R/region_enrich.R
RegionOverlapScores R Documentation
Get overlaps between list of granges and granges in matrix format
Description
Get overlaps between list of granges and granges in matrix format
Usage
RegionOverlapScores(ranges, regionsList)
Arguments
ranges
GenomicRanges of dataset peaks (will be rows of output matrix)
regionsList
List of regions in GenomicRanges format (will be columns of output matrix)
Value
Binary Matrix of ranges by regions overlaps (1 for overlap, 0 otherwise)
yanwu2014/chromfunks documentation built on Aug. 20, 2023, 9:17 a.m.
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View source: R/region_enrich.R
| RegionOverlapScores | R Documentation |
Get overlaps between list of granges and granges in matrix format
Description
Get overlaps between list of granges and granges in matrix format
Usage
RegionOverlapScores(ranges, regionsList)
Arguments
ranges |
GenomicRanges of dataset peaks (will be rows of output matrix) |
regionsList |
List of regions in GenomicRanges format (will be columns of output matrix) |
Value
Binary Matrix of ranges by regions overlaps (1 for overlap, 0 otherwise)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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