EmbedFeatures: Embeds features relative to factor coordinates

In yanwu2014/swne: Similarity Weighted Nonnegative Embedding: A method for visualizing high dimensional datasets

Embeds features relative to factor coordinates

Description

Embeds features relative to factor coordinates

Usage

EmbedFeatures(
  swne.embedding,
  feature.assoc,
  features.embed,
  alpha.exp = 1,
  n_pull = NULL,
  scale.cols = T,
  overwrite = T
)

Arguments

swne.embedding	Existing swne embedding from EmbedSWNE
feature.assoc	Feature loadings or correlations (features x factors)
features.embed	Names of features to embed
alpha.exp	Increasing alpha.exp increases how much the factors "pull" the features
n_pull	Number of factors pulling on each feature. Must be >= 3
scale.cols	Whether or not to scale the input columns to 0 - 1
overwrite	Whether or not to overwrite any existing feature embedding

Value

swne.embedding with feature coordinates (feature.coords)

yanwu2014/swne documentation built on Aug. 5, 2023, 4:42 a.m.