FactorAssociation: Find the top gene or geneset markers for each NMF factor...

Description Usage Arguments Value

View source: R/annotate_nmf.R

Description

Find the top gene or geneset markers for each NMF factor using pearson/spearman correlation, or mutual information

Usage

1
FactorAssociation(feature.mat, nmf.scores, n.cores = 8, metric = "IC")

Arguments

feature.mat

Feature matrix (features x samples)

nmf.scores

Factor scores (factors x samples)

n.cores

Number of cores to use

metric

Association metric: pearson, spearman, or IC (information coefficient)

Value

Features x factors matrix of associations or correlations


yanwu2014/swne documentation built on Dec. 7, 2018, 8:55 a.m.