Files in yanwu2014/swne
Similarity Weighted Nonnegative Embedding: A method for visualizing high dimensional datasets

.Rbuildignore
.gitignore
DESCRIPTION
Examples/cortical_neuron_projection.Rmd
Examples/cortical_neuron_projection.html
Examples/dentate_gyrus_swne_velocyto.Rmd
Examples/dentate_gyrus_swne_velocyto.html
Examples/multiple_pancreas_alignment_swne.Rmd
Examples/multiple_pancreas_alignment_swne.html
Examples/multiple_pancreas_workflow.R Examples/pbmc3k_swne_pagoda2.Rmd
Examples/pbmc3k_swne_pagoda2.html
Examples/pbmc3k_swne_seurat.Rmd
Examples/pbmc3k_swne_seurat.html
NAMESPACE
R/RcppExports.R R/annotate_nmf.R R/data_processing.R R/nmf.R R/run_swne.R R/similarity.R R/swne_plotting.R R/velocity.R README.md Scripts/hemato_swne.R Scripts/snDropSeq_swne.R Scripts/splatter_discrete_swne.R Scripts/splatter_generate.R Scripts/splatter_helper_functions.R Scripts/splatter_runtime_analysis.R Scripts/splatter_trajectory_swne.R Scripts/swne_projection.R
_config.yml
man/AdjustVariance.Rd man/CalcGenesetLoadings.Rd man/CalcSNN.Rd man/CheckGeneEmbedding.Rd man/ClusterIndicatorMatrix.Rd man/EmbedFeatures.Rd man/EmbedGenesets.Rd man/EmbedSWNE.Rd man/ExtractDebatchedSeurat.Rd man/ExtractField.Rd man/ExtractNormCounts.Rd man/ExtractSWNEColors.Rd man/FactorAssociation.Rd man/FeaturePlotDims.Rd man/FeaturePlotSWNE.Rd man/FilterData.Rd man/FilterGenesets.Rd man/FindNumFactors.Rd man/FlattenGroups.Rd man/MutualInf.Rd man/NormalizeCounts.Rd man/PlotDims.Rd man/PlotFactorSelection.Rd man/PlotSWNE.Rd man/PlotSWNEVelocyto.Rd man/ProjectFeatures.Rd man/ProjectGenesets.Rd man/ProjectSNN.Rd man/ProjectSWNE.Rd man/ProjectSamples.Rd man/ReadData.Rd man/ReadGenesets.Rd man/ReadGroups.Rd man/RenameFactors.Rd man/RunGSEA.Rd man/RunNMF.Rd man/RunSWNE.Rd man/ScaleCounts.Rd man/SelectFeatures.Rd man/SelectGenesets.Rd man/SummarizeAssocFeatures.Rd man/UnflattenDataframe.Rd man/UnflattenGroups.Rd man/VelocytoArrows.Rd man/WriteGenesets.Rd man/WriteGroups.Rd man/clean_genesets.Rd man/compute_projected_snn.Rd man/ft_transform.Rd man/genesets_indicator.Rd man/get_factor_coords.Rd man/get_sample_coords.Rd man/ggHeat.Rd man/ica_init.Rd man/kl_div.Rd man/nnsvd_init.Rd man/normalize_vector.Rd man/winsorize_matrix.Rd
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/swne_cpp_funcs.cpp
swne.Rproj
yanwu2014/swne documentation built on Sept. 11, 2018, 7:54 a.m.