Description Usage Arguments Value

Projects dataset onto genesets using either NMF or a nonnegative linear model

1 2 | ```
ProjectGenesets(norm.counts, genesets, method = "lm", loss = "mse",
n.cores = 1)
``` |

`norm.counts` |
Normalized input data |

`genesets` |
List of genesets to use |

`method` |
Method used to project data onto genesets. lm uses a simple linear model while mf will use a masked version of nmf. |

`loss` |
Loss function for the nonnegative linear model |

`n.cores` |
Number of cores to use |

List of gene loadings and factor scores, with each factor corresponding to a geneset

yanwu2014/swne documentation built on Dec. 14, 2018, 3:07 p.m.

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