FeaturePlotDims: Plots 2d embedding with feature overlayed

In yanwu2014/swne: Similarity Weighted Nonnegative Embedding: A method for visualizing high dimensional datasets

Plots 2d embedding with feature overlayed

Description

Plots 2d embedding with feature overlayed

Usage

FeaturePlotDims(
  dim.scores,
  feature.scores,
  feature.name = NULL,
  x.lab = "tsne1",
  y.lab = "tsne2",
  alpha.plot = 0.5,
  quantiles = c(0.01, 0.99),
  show.axes = T,
  pt.size = 1,
  font.size = 12,
  color.palette = "YlOrRd"
)

Arguments

dim.scores	2D embedding coordinates. Must be N x 2 samples
feature.name	Name of feature
x.lab	X axis label
y.lab	Y axis label
alpha.plot	Data point transparency
quantiles	Quantiles to trim outliers from
show.axes	Plot x and y axes
pt.size	Sample point size
font.size	Font size for axis labels
color.palette	RColorbrewer palette to use
feature.score	Feature vector to overlay

Value

ggplot2 object with dim plot with feature overlayed

yanwu2014/swne documentation built on Aug. 5, 2023, 4:42 a.m.