NormalizeCounts: Normalization and batch effect removal adapted from pagoda2...

Description Usage Arguments Value

View source: R/data_processing.R

Description

Normalization and batch effect removal adapted from pagoda2 [insert citation here]

Usage

1
NormalizeCounts(counts, depthScale = 1000, batch = NULL)

Arguments

counts

Input data matrix

depthScale

Rescale all columns to this value

batch

Factor the same length as ncol(counts) which contains batch effects to remove

Value

Normalized data matrix with batch effects removed


yanwu2014/swne documentation built on Dec. 7, 2018, 8:55 a.m.