yanwu2014/swne
Similarity Weighted Nonnegative Embedding: A method for visualizing high dimensional datasets

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yanwu2014/swne: Similarity Weighted Nonnegative Embedding: A method for visualizing high dimensional datasets
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API for yanwu2014/swne
Similarity Weighted Nonnegative Embedding: A method for visualizing high dimensional datasets

Global functions
.neg Source code
.norm Source code
.pos Source code
AdjustVariance Man page Source code
BuildPAGA Man page Source code
CalcGenesetLoadings Man page Source code
CalcKNN Man page Source code
CalcSNN Man page Source code
CheckGeneEmbedding Man page Source code
ClusterIndicatorMatrix Man page Source code
ComputeSNN Source code
EmbedFeatures Man page Source code
EmbedPromoters Man page Source code
EmbedSWNE Man page Source code
EmbedTFBS Man page Source code
ExtractField Man page
ExtractNormCounts Man page Source code
ExtractSWNEColors Man page Source code
FactorAssociation Man page Source code
FeaturePlotDims Man page Source code
FeaturePlotSWNE Man page Source code
FilterData Man page Source code
FilterGenesets Man page Source code
FindNumFactors Man page Source code
FlattenGroups Man page Source code
MutualInf Man page Source code
NormalizeCounts Man page Source code
PartitionSimilarityGraph Man page Source code
PlotDims Man page Source code
PlotFactorSelection Man page Source code
PlotSWNE Man page Source code
ProjectFeatures Man page Source code
ProjectGenesets Man page Source code
ProjectSNN Man page Source code
ProjectSWNE Man page Source code
ProjectSamples Man page Source code
PruneSNN Man page Source code
Read10XHuman Man page Source code
ReadData Man page Source code
ReadGenesets Man page Source code
ReadGroups Man page Source code
RenameFactors Man page Source code
RunGSEA Man page Source code
RunNMF Man page Source code
RunSWNE Man page Source code
RunSWNE.Pagoda2 Man page Source code
RunSWNE.Seurat Man page Source code
RunSWNE.cisTopic Man page Source code
RunSWNE.dgCMatrix Man page Source code
RunSWNE.dgTMatrix Man page Source code
RunSWNE.matrix Man page Source code
ScaleCounts Man page Source code
SelectFeatures Man page Source code
SelectGenesets Man page Source code
SummarizeAssocFeatures Man page Source code
UnflattenDataframe Man page Source code
UnflattenGroups Man page Source code
WriteGenesets Man page Source code
WriteGroups Man page Source code
clean_genesets Man page Source code
colMeanVarS Source code
colSumByFac Source code
compute_partitions Man page Source code
compute_projected_snn Man page Source code
ft_transform Man page Source code
genesets_indicator Man page Source code
get_factor_coords Man page Source code
get_sample_coords Man page Source code
ggBarplot Man page Source code
ggHeat Man page Source code
ica_init Man page Source code
inplaceWinsorizeSparseCols Source code
kl_div Man page Source code
nnsvd_init Man page Source code
normalize_vector Man page Source code
pnorm_over_mat Source code
run_swne Source code
winsorize_matrix Man page Source code
yanwu2014/swne documentation built on Aug. 5, 2023, 4:42 a.m.

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