RunGSEA: Runs GSEA on the gene association coefficients for each NMF

Description Usage Arguments Value

View source: R/annotate_nmf.R

Description

Runs GSEA on the gene association coefficients for each NMF

Usage

1
2
RunGSEA(gene.factor.assoc, genesets, power = 1, n.rand = 1000,
  n.cores = 1)

Arguments

gene.factor.assoc

Matrix with the gene associations for each nmf

genesets

Genesets to use (as a named list)

power

GSEA coefficient power

n.rand

Number of permutations to use when calculating significance

n.cores

Number of threads to use

Value

Dataframe summarizing the gsea results


yanwu2014/swne documentation built on Dec. 18, 2018, 2:39 a.m.