RunGSEA | R Documentation |
Runs GSEA on the gene association coefficients for each NMF
RunGSEA(gene.factor.assoc, genesets, power = 1, n.rand = 1000, n.cores = 1)
gene.factor.assoc |
Matrix with the gene associations for each nmf |
genesets |
Genesets to use (as a named list) |
power |
GSEA coefficient power |
n.rand |
Number of permutations to use when calculating significance |
n.cores |
Number of threads to use |
Dataframe summarizing the gsea results
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