PruneSNN: Prune SNN with PAGA graph. Adapted from Monocle3
In yanwu2014/swne: Similarity Weighted Nonnegative Embedding: A method for visualizing high dimensional datasets
PruneSNN R Documentation
Prune SNN with PAGA graph. Adapted from Monocle3
Description
Prune SNN with PAGA graph. Adapted from Monocle3
Usage
PruneSNN(snn, knn, clusters = NULL, qval.cutoff = 0.05)
Arguments
snn
Shared Nearest Neighbors (SNN) graph in the form of a sparse matrix
knn
kNN in the form of a sparse matrix
clusters
Cell clusters
qval.cutoff
Q-value cutoff for significant edges
Value
SNN graph with spurious edges pruned
yanwu2014/swne documentation built on Aug. 5, 2023, 4:42 a.m.
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| PruneSNN | R Documentation |
Prune SNN with PAGA graph. Adapted from Monocle3
Description
Prune SNN with PAGA graph. Adapted from Monocle3
Usage
PruneSNN(snn, knn, clusters = NULL, qval.cutoff = 0.05)
Arguments
snn |
Shared Nearest Neighbors (SNN) graph in the form of a sparse matrix |
knn |
kNN in the form of a sparse matrix |
clusters |
Cell clusters |
qval.cutoff |
Q-value cutoff for significant edges |
Value
SNN graph with spurious edges pruned
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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