FilterData: Filter data by minimum cells, minimum genes, and winsorizes...

Description Usage Arguments Value

View source: R/data_processing.R

Description

Filter data by minimum cells, minimum genes, and winsorizes data

Usage

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FilterData(x, min.samples.frac, trim, min.nonzero.features = 500,
  max.sample.sum = 50000)

Arguments

x

Input matrix

min.samples.frac

Minimum number of samples for a feature to be included

trim

Fraction of samples to winsorize if trim < 1. If trim > 1, absolute number of samples to winsorize

min.nonzero.features

Minimum number of nonzero features for a sample to be included

max.sample.sum

Samples with greater than this sum of features will be excluded

Value

Filtered and winsorized data matrix


yanwu2014/swne documentation built on Dec. 14, 2018, 3:07 p.m.