SelectGenesets | R Documentation |
Select genesets for embedding
SelectGenesets(
norm.counts,
nmf.scores,
genesets,
assoc.metric = "pearson",
method = "lm",
n.cores = 8,
genesets.return = 5
)
norm.counts |
Normalized input data |
nmf.scores |
NMF factors (factors x samples) |
genesets |
List of genesets to use |
method |
Method used to project data onto genesets. lm uses a simple linear model while mf will use a masked version of nmf. |
n.cores |
Number of cores to use |
genesets.return |
Number of genesets to return for each factor |
dataframe of top genesets associated with each factor
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