ScaleCounts: Normalize, adjust feature variance, and scale data matrix

Description Usage Arguments Value

View source: R/data_processing.R

Description

Normalize, adjust feature variance, and scale data matrix

Usage

1
2
ScaleCounts(counts, batch = NULL, method = "log", adj.var = T,
  plot.var.adj = F, gam.k = 10)

Arguments

counts

Input data matrix

batch

Factor with batch identity for each sample

method

Scaling method

adj.var

Whether or not to apply mean variance adjustment for features

plot.var.adj

Whether or not to plot the mean variance relationship

gam.k

Number of additive models to use for variance modeling

Value

Normalized and scaled data matrix


yanwu2014/swne documentation built on Dec. 14, 2018, 3:07 p.m.