API for zeropin/TFCookbook
Analyzing protein-DNA interactions data in principled way
| Global functions | |
|---|---|
| .get_motif_positions | Source code |
| .validate_PEM_input | Source code |
| SeqToByte | Man page Source code |
| SeqToMethylByte | Man page Source code |
| addAnchorMatrix | Man page Source code |
| addMethylMatrix | Source code |
| as.Coefficients | Man page Source code |
| as.PEM | Man page |
| as.PEM,elnet-method | Man page |
| as.PEM,lm-method | Man page |
| as.PEM,matrix-method | Man page |
| buildEnergyModel | Man page Source code |
| buildMethylationModel | Man page Source code |
| composeMotif | Man page Source code |
| countMismatch | Man page Source code |
| decomposeMotif | Man page Source code |
| getEnergyMatrix | Man page |
| getSeqFromUCSC | Man page Source code |
| highlightMismatch | Man page Source code |
| kmer | Man page Source code |
| matchPEM,matrix,DNAStringSet-method | Man page |
| matchPEM,matrix,GenomicRanges-method | Man page |
| matchPEM,matrix,character-method | Man page |
| plotEnergyLogo | Man page Source code |
| predictEnergy | Man page |
| predictEnergy,character,lm-method | Man page |
| predictEnergy,character,matrix-method | Man page |
| predictEnergyMW | Man page Source code |
| reverseComplement | Man page Source code |
| selectVariants | Man page Source code |
