add.reactions: append reaction

In zgzhao/gmetab: syzMetab: R package for metabolic network analysis

Description

Append reaction to reaction lists

Usage

add.reactions(object, ds, t, genes, name = NULL, reversible = FALSE)

Arguments

object	ReactionList or equivalent list
ds	character (substrate name) or data.frame with at least these columns: from, to, genes, reversible
t	character, product name (ignore if ds is a data.frame)
genes	character vector, names of genes involved in the reaction (ignore if ds is a data.frame)
name	additional identifer(s) for reaction (ignore if ds is a data.frame)
reversible	TRUE/FALSE (default). If TRUE, add reactions in both directions. Ignore if ds is a data.frame.

Details

Useful for adding to network spontaneous reactions without associated genes.

Value

ReactionList object

Author(s)

ZG Zhao

zgzhao/gmetab documentation built on Dec. 23, 2021, 9:17 p.m.