make_rset: generate ReactionSet object

Description Usage Arguments Details Value Author(s)

Description

Mostly for internal use.

Usage

1
make_rset(object, org = "ko", d.path = "KEGG", ...)

Arguments

object

KDataSet or list object. If feeding a list object, make sure each list elements are also lists containing substrate, product, gene and reversible elements.

org

character, "ko" or organism identifier.

d.path

file path for KEGG_get.

...

other params

Details

"ReactionSet" is S4 class designed for mgraph. Reactions are presented in different forms from those of KDataSet.

Value

ReactionSet object

Author(s)

ZG Zhao


zgzhao/gmetab documentation built on Dec. 23, 2021, 9:17 p.m.