robust: calculate mutational robustness

Description Usage Arguments Details Value Author(s)

Description

Calculate mutational robustness of metabolic network

Usage

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robust(object, GMR = 0.01, prob = FALSE, FUN = function(x) {
    -log(x)
})

Arguments

object

mgraph with substrates and products set

GMR

numeric (default 0.01), gene mutation rate/probability between 0 and 1.

prob

TRUE/FALSE (default). Return functional probability of the network if TRUE.

FUN

function translates failure probability to robustness value. Default: FUN=function(x) -log(x)

Details

NOTE: you must set substrates and products before doing this!

Value

a number for robustness

Author(s)

ZG Zhao


zgzhao/gmetab documentation built on Dec. 23, 2021, 9:17 p.m.