prob_stcuts: functional probability of s-t gene cutsets
In zgzhao/gmetab: syzMetab: R package for metabolic network analysis

Description Usage Arguments Details Value Author(s)

Calculate functional probability of a gene cutset

1	prob_stcuts(g.sets, s.groups, GMR = 0.01)

`g.sets`	list, each item is a named gene vector and the names (set names) are used for grouping.
`s.groups`	list, each item if a vector containg set names.
`GMR`	numeric, gene mutation rate (default 0.01).

Note that a "functional" cutset of genes means all genes in it are mutated. If containing overlap genes, the cut sets must be grouped and joint probability is calculated.

numeric vector, functional probability of each gene group.

ZG Zhao

zgzhao/gmetab documentation built on Dec. 23, 2021, 9:17 p.m.