setorg_graph: KO-graph to species-specific graph
In zgzhao/gmetab: syzMetab: R package for metabolic network analysis
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Normalize KEGG generic pathway to species specific pathway.
Usage
1
setorg_graph(object, org, d.path = "KEGG")
Arguments
object
xgraph object
org
character
d.path
file path for KEGG_get.
Details
Adjust and filter reactions, and rebuild graph object from reactions list.
Value
graph with organism set
Author(s)
ZG Zhao
Examples
1
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8
## NOT RUN
library(syzMetab)
gm <- make_mgraph("ko00010")
gx <- subset_graph(gm, org="ath")
par(mfrow=c(2,1))
plot(gm)
## edges (reactions) with zero gene are show in dotted lines.
plot(gx)
zgzhao/gmetab documentation built on Dec. 23, 2021, 9:17 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Normalize KEGG generic pathway to species specific pathway.
Usage
1 | setorg_graph(object, org, d.path = "KEGG")
|
Arguments
object |
xgraph object |
org |
character |
d.path |
file path for |
Details
Adjust and filter reactions, and rebuild graph object from reactions list.
Value
graph with organism set
Author(s)
ZG Zhao
Examples
1 2 3 4 5 6 7 8 | ## NOT RUN
library(syzMetab)
gm <- make_mgraph("ko00010")
gx <- subset_graph(gm, org="ath")
par(mfrow=c(2,1))
plot(gm)
## edges (reactions) with zero gene are show in dotted lines.
plot(gx)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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