make_kdset: make metabolic pathway

In zgzhao/gmetab: syzMetab: R package for metabolic network analysis

Description

Make metabolic pathway (KDataSet object)

Usage

make_kdset(object, d.path = "KEGG")

Arguments

object	character, KEGG pathway ortholog (ko) index string such as ko00010, 00010 or ath00010
d.path	file path for KEGG_get.

Details

This function reads from local folder (d.path) a KEGG xml file, which will be downloaded if not exists. Make sure internet is accessible. Refer to KDataSet for class information. TODO: make pathway from local KGML file regardless of d.path

Value

KDataSet object

Author(s)

ZG Zhao

zgzhao/gmetab documentation built on Dec. 23, 2021, 9:17 p.m.