setorg_path: General to organism-specific KDataSet conversion
In zgzhao/gmetab: syzMetab: R package for metabolic network analysis
Description
Usage
Arguments
Details
Value
Author(s)
Description
Convert KOG names of a KDataSet object to real gene names
Usage
1
setorg_path(object, org, d.path = "KEGG")
Arguments
object
a KDataSet object
org
abbreviation of an organism such as "ath"
d.path
file path for KEGG_get
Details
In KDataSet objects, genes involved in reactions are generally represented by KEGG entry names (k genes or KOG).
Value
KDataSet object
Author(s)
ZG Zhao
zgzhao/gmetab documentation built on Dec. 23, 2021, 9:17 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Convert KOG names of a KDataSet object to real gene names
Usage
1 | setorg_path(object, org, d.path = "KEGG")
|
Arguments
object |
a KDataSet object |
org |
abbreviation of an organism such as "ath" |
d.path |
file path for |
Details
In KDataSet objects, genes involved in reactions are generally represented by KEGG entry names (k genes or KOG).
Value
KDataSet object
Author(s)
ZG Zhao
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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