hlaAASeqClass: Class of HLA Amino Acid Sequence Type

In zhengxwen/HIBAG: HLA Genotype Imputation with Attribute Bagging

Class of HLA Amino Acid Sequence Type

Description

The definition of a class for HLA protein amino acid sequences.

Value

There are following components:

locus	HLA locus
pos.start	the starting position in basepair
pos.end	the end position in basepair
value	a data frame
assembly	the human genome reference, such like "hg19"
start.position	the start position
reference	reference sequence

The component value includes:

sample.id	sample ID
allele1	amino acid or nucleotide sequence
allele2	amino acid or nucleotide sequence
P1, ..., Pn	if applicable, a matrix of posterior probability, row – sample, column – position of amino acid

Author(s)

Xiuwen Zheng

See Also

hlaConvSequence

zhengxwen/HIBAG documentation built on April 16, 2024, 8:41 a.m.