hlaAlleleClass: Class of HLA/KIR Type

In zhengxwen/HIBAG: HLA Genotype Imputation with Attribute Bagging

Class of HLA/KIR Type

Description

The definition of a class for HLA/KIR types, returned from hlaAllele.

Value

There are following components:

locus	HLA/KIR locus
pos.start	the starting position in basepair
pos.end	the end position in basepair
value	a data frame
assembly	the human genome reference, such like "hg19"
postprob	if applicable, a matrix of all posterior probabilities

~

The component value includes:

sample.id	sample ID
allele1	HLA allele
allele2	HLA allele
prob	if applicable, the posterior probability

Author(s)

Xiuwen Zheng

See Also

hlaAllele

zhengxwen/HIBAG documentation built on Nov. 19, 2024, 1:01 p.m.