hlaAlleleSubset: Get a subset of HLA/KIR types

In zhengxwen/HIBAG: HLA Genotype Imputation with Attribute Bagging

Get a subset of HLA/KIR types

Description

Get a subset of HLA/KIR types from an object of hlaAlleleClass.

Usage

hlaAlleleSubset(hla, samp.sel=NULL)

Arguments

hla	an object of hlaAlleleClass
samp.sel	a logical vector, or an integer vector of indices

Value

Return hlaAlleleClass.

Author(s)

Xiuwen Zheng

See Also

hlaAllele, hlaAlleleDigit

Examples

head(HLA_Type_Table)
dim(HLA_Type_Table)  # 60 13

# make a "hlaAlleleClass" object
hla.id <- "A"
hla <- hlaAllele(HLA_Type_Table$sample.id,
    H1 = HLA_Type_Table[, paste(hla.id, ".1", sep="")],
    H2 = HLA_Type_Table[, paste(hla.id, ".2", sep="")],
    locus=hla.id, assembly="hg19")
summary(hla)

subhla <- hlaAlleleSubset(hla, 1:100)
summary(subhla)

zhengxwen/HIBAG documentation built on April 16, 2024, 8:41 a.m.